Last updated: 2023-10-09

Checks: 5 2

Knit directory: multistate2/

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    Untracked:  analysis/withtimeinstaate.pdf
    Untracked:  analysis/your_filename.pdf
    Untracked:  atriskforcad.pdf
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    Modified:   analysis/newsaturm.Rmd
    Modified:   analysis/plottigcountsten.Rmd
    Modified:   analysis/predicted_risks.Rmd
    Modified:   analysis/prediction_threshod_test.Rmd
    Modified:   analysis/rmseanalysis.Rmd
    Modified:   analysis/survcumten.Rmd
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Rmd 0c7a6a2 Sarah Urbut 2023-09-24 Update
html 0c7a6a2 Sarah Urbut 2023-09-24 Update
Rmd 273d024 Sarah Urbut 2023-09-22 Update
html 273d024 Sarah Urbut 2023-09-22 Update
Rmd 291f497 Sarah Urbut 2023-09-15 Update
Rmd 15e88ea Sarah Urbut 2023-08-24 Update
html 15e88ea Sarah Urbut 2023-08-24 Update
Rmd 1bf132a Sarah Urbut 2023-08-24 Update
Rmd 7d24d01 Sarah Urbut 2023-08-23 update
Rmd dbdd930 Sarah Urbut 2023-08-23 Update
html dbdd930 Sarah Urbut 2023-08-23 Update

R Markdown

Health

[1] 0.3195976
[1] 0.3206732
[1] 6.083 6.120
[1] 0.7593414
[1] 0.2691174
[1] 33.599 10.909
[1] 0.03078152
[1] 0.06726451
[1] 0.592 2.247
[1] 0.03172793
[1] 0.06976412
[1] 0.611 2.346
[1] 0.03557008
[1] 0.04541186
[1] 0.679 1.337
[1] 0.03974571
[1] 0.03467187
[1] 0.744 1.134
[1] 0.04578238
[1] 0.0401413
[1] 0.866 1.064

Now do starting at Ht:

[1] 0.3652479
[1] 0.3586877
[1] 7.051 6.739
[1] 0.8381481
[1] 0.3421206
[1] 37.454 12.252
[1] 0.07090868
[1] 0.2324219
[1] 1.474 6.444
[1] 0.07118986
[1] 0.2338118
[1] 1.482 6.527
[1] 0.07232609
[1] 0.2219245
[1] 1.468 6.328
[1] 0.0713475
[1] 0.1671241
[1] 1.363 5.091
[1] 0.07144164
[1] 0.1758683
[1] 1.367 5.383
   user  system elapsed 
328.964  45.486 374.565

Now do starting at Dm:

[1] 0.3792476
[1] 0.5489986
[1]  7.246 10.930
[1] 0.8218663
[1] 0.4696076
[1] 42.671 16.762
[1] 0.1863205
[1] 0.3020425
[1] 4.018 8.995
[1] 0.1914661
[1] 0.3102192
[1] 4.101 9.395
[1] 0.1896107
[1] 0.2994533
[1] 3.954 8.513
[1] 0.1849873
[1] 0.3065034
[1] 3.927 9.147
[1] 0.1853173
[1] 0.3041214
[1] 3.924 8.646
   user  system elapsed 
307.956  41.761 349.827

HyperLip

[1] 0.3448147
[1] 0.3550656
[1] 7.027 7.028
[1] 0.8766512
[1] 0.4021383
[1] 35.912 12.575
[1] 0.1710908
[1] 0.3552907
[1] 3.461 9.932
[1] 0.1733144
[1] 0.358884
[1]  3.494 10.052
[1] 0.1620615
[1] 0.3139691
[1] 3.306 8.584
[1] 0.1711894
[1] 0.355333
[1] 3.485 9.834
[1] 0.1619477
[1] 0.3238291
[1] 3.325 9.011
   user  system elapsed 
309.548  42.638 352.298 

R version 4.3.1 (2023-06-16)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Ventura 13.5.2

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRblas.0.dylib 
LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib;  LAPACK version 3.11.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

time zone: America/Chicago
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] ehaGoF_0.1.1       CVrisk_1.1.0       babynames_1.0.1    gapminder_1.0.0   
 [5] carData_3.0-5      plotly_4.10.2      DT_0.28            gt_0.9.0          
 [9] RColorBrewer_1.1-3 data.table_1.14.8  pROC_1.18.4        rsq_2.5           
[13] survMisc_0.5.6     gridExtra_2.3      ggfortify_0.4.16   reshape_0.8.9     
[17] eulerr_7.0.0       survminer_0.4.9    ggpubr_0.6.0       survival_3.5-5    
[21] lubridate_1.9.2    forcats_1.0.0      stringr_1.5.0      purrr_1.0.1       
[25] readr_2.1.4        tidyr_1.3.0        tibble_3.2.1       ggplot2_3.4.3     
[29] tidyverse_2.0.0    dplyr_1.1.3        ggsci_3.0.0       

loaded via a namespace (and not attached):
 [1] rlang_1.1.1       magrittr_2.0.3    git2r_0.32.0      compiler_4.3.1   
 [5] vctrs_0.6.3       pkgconfig_2.0.3   fastmap_1.1.1     ellipsis_0.3.2   
 [9] backports_1.4.1   labeling_0.4.2    KMsurv_0.1-5      utf8_1.2.3       
[13] promises_1.2.0.1  rmarkdown_2.23    tzdb_0.4.0        nloptr_2.0.3     
[17] xfun_0.39         cachem_1.0.8      jsonlite_1.8.7    highr_0.10       
[21] later_1.3.1       Deriv_4.1.3       broom_1.0.5       R6_2.5.1         
[25] bslib_0.5.0       stringi_1.7.12    car_3.1-2         boot_1.3-28.1    
[29] jquerylib_0.1.4   Rcpp_1.0.11       knitr_1.43        zoo_1.8-12       
[33] httpuv_1.6.11     Matrix_1.6-0      splines_4.3.1     timechange_0.2.0 
[37] tidyselect_1.2.0  rstudioapi_0.15.0 abind_1.4-5       yaml_2.3.7       
[41] lattice_0.21-8    plyr_1.8.8        withr_2.5.0       evaluate_0.21    
[45] xml2_1.3.5        pillar_1.9.0      whisker_0.4.1     generics_0.1.3   
[49] rprojroot_2.0.3   hms_1.1.3         munsell_0.5.0     scales_1.2.1     
[53] minqa_1.2.5       xtable_1.8-4      glue_1.6.2        lazyeval_0.2.2   
[57] tools_4.3.1       lme4_1.1-34       ggsignif_0.6.4    fs_1.6.3         
[61] grid_4.3.1        crosstalk_1.2.0   colorspace_2.1-0  nlme_3.1-162     
[65] cli_3.6.1         km.ci_0.5-6       workflowr_1.7.0   fansi_1.0.4      
[69] viridisLite_0.4.2 gtable_0.3.3      rstatix_0.7.2     sass_0.4.7       
[73] digest_0.6.33     htmlwidgets_1.6.2 farver_2.1.1      htmltools_0.5.5  
[77] lifecycle_1.0.3   httr_1.4.6        MASS_7.3-60