Figure5
2023-11-13
Last updated: 2023-11-13
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R Markdown
We fit the model and plot the ten year versus lifetime absolute risk reduction for inddividuals starting from health.
Now lifetime versus absolute risk reduction
Now marginalized across all states and covariate profiles:
R version 4.3.1 (2023-06-16)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Sonoma 14.0
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
time zone: America/Chicago
tzcode source: internal
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] ggridges_0.5.4 cowplot_1.1.1 babynames_1.0.1 gapminder_1.0.0
[5] carData_3.0-5 plotly_4.10.2 DT_0.30 gt_0.9.0
[9] RColorBrewer_1.1-3 data.table_1.14.8 pROC_1.18.4 rsq_2.5
[13] survMisc_0.5.6 gridExtra_2.3 ggfortify_0.4.16 eulerr_7.0.0
[17] survminer_0.4.9 ggpubr_0.6.0 survival_3.5-5 lubridate_1.9.2
[21] forcats_1.0.0 stringr_1.5.0 purrr_1.0.1 readr_2.1.4
[25] tidyr_1.3.0 tibble_3.2.1 ggplot2_3.4.4 tidyverse_2.0.0
[29] dplyr_1.1.3 ggsci_3.0.0 reshape2_1.4.4
loaded via a namespace (and not attached):
[1] tidyselect_1.2.0 viridisLite_0.4.2 farver_2.1.1 lazyeval_0.2.2
[5] fastmap_1.1.1 promises_1.2.0.1 digest_0.6.33 timechange_0.2.0
[9] lifecycle_1.0.3 Deriv_4.1.3 magrittr_2.0.3 compiler_4.3.1
[13] rlang_1.1.1 sass_0.4.7 tools_4.3.1 utf8_1.2.4
[17] yaml_2.3.7 knitr_1.43 ggsignif_0.6.4 labeling_0.4.2
[21] htmlwidgets_1.6.2 xml2_1.3.5 plyr_1.8.8 abind_1.4-5
[25] workflowr_1.7.0 withr_2.5.2 grid_4.3.1 fansi_1.0.5
[29] git2r_0.32.0 xtable_1.8-4 colorspace_2.1-0 scales_1.2.1
[33] MASS_7.3-60 cli_3.6.1 rmarkdown_2.23 generics_0.1.3
[37] rstudioapi_0.15.0 km.ci_0.5-6 httr_1.4.6 tzdb_0.4.0
[41] minqa_1.2.5 cachem_1.0.8 splines_4.3.1 vctrs_0.6.4
[45] boot_1.3-28.1 Matrix_1.6-0 jsonlite_1.8.7 car_3.1-2
[49] hms_1.1.3 rstatix_0.7.2 jquerylib_0.1.4 glue_1.6.2
[53] nloptr_2.0.3 stringi_1.7.12 gtable_0.3.3 later_1.3.1
[57] lme4_1.1-34 munsell_0.5.0 pillar_1.9.0 htmltools_0.5.5
[61] R6_2.5.1 KMsurv_0.1-5 rprojroot_2.0.3 evaluate_0.21
[65] lattice_0.21-8 highr_0.10 backports_1.4.1 broom_1.0.5
[69] httpuv_1.6.11 bslib_0.5.0 Rcpp_1.0.11 nlme_3.1-162
[73] xfun_0.39 fs_1.6.3 zoo_1.8-12 pkgconfig_2.0.3